Category: Uncategorized

  • National numbers, Dec. 13

    National numbers, Dec. 13

    In the past week (December 6 through 12), the U.S. reported about 1.6 million new cases, according to the COVID Tracking Project. This amounts to:

    • An average of 228,000 new cases each day (23% increase from the previous week)
    • 487 total new cases for every 100,000 Americans
    • 1 in 205 Americans getting diagnosed with COVID-19 in the past week
    • 44% of the total cases reported across the globe this week, according to the World Health Organization
    4 bar charts showing key COVID-19 metrics for the US over time. Today, states reported 1.9M tests, 223k cases, 108,487 currently hospitalized (record), and 2,477 deaths.
    Nationwide COVID-19 metrics published in the COVID Tracking Project’s daily update on December 12. Seven-day averages for cases, deaths, and hospitalizations are all at all-time highs.

    In the month of November, one in 74 Americans was diagnosed with COVID-19. This terrible rise in cases has already put enormous strain on the nation’s healthcare system, and the outbreak is not slowing down. One in 131 Americans was diagnosed with COVID-19 in the first 12 days of December alone.

    Last week, America also saw:

    • 108,500 people now hospitalized with COVID-19 (33.1 for every 100,000 people)
    • 17,300 new COVID-19 deaths (5.3 for every 100,000 people)

    In last Sunday’s issue, I reported that 15,000 deaths in one week marked a national record; this week, we saw 2,000 more. How do you think about numbers this big? You could compare the pandemic to 9/11, Pearl Harbor, and other American tragedies, but even this practice minimizes the fact that a day of 3,000 deaths is only one day in a year of mass suffering.

    Stay safe out there, readers. Stay well. Stay kind.

  • Featured sources, Dec. 6

    These sources, along with all others featured in previous weeks, are included in the COVID-19 Data Dispatch resource list. Please note that I took state school data sources out of this list because my COVID-19 state school data survey provides a more comprehensive view of these data.

    • Allocating Regeneron’s treatment: On November 21, Regeneron’s monoclonal antibody treatment received Emergency Use Authorization from the FDA. A new dataset from the HHS shows how this drug is being allocated to states and territories. For more information on the dataset, see HHS’s November 23 press release.
    • COVID-19 relief tracker: The Project on Government Oversight (POGO) has a new tracker which shows where COVID-19 relief funds from the federal government have been spent. The dashboard visualizes data from USAspending.gov, and is searchable by state, county, and ZIP code.
    • Census COVID-19 Demographic and Economic Resources: My coworker Diana Shishkina recently alerted me to a Census page which compiles and visualizes a great deal of data on how COVID-19 has impacted Americans. It includes data from weekly small business surveys, the Household Pulse Survey, and a wealth of other information.
  • National numbers, Dec. 6

    National numbers, Dec. 6

    In the past week (November 29 through December 5), the U.S. reported about 1.3 million new cases, according to the COVID Tracking Project. This amounts to:

    • An average of 186,000 new cases each day (16% increase from the previous week)
    • 297 total new cases for every 100,000 Americans
    • 1 in 252 Americans getting diagnosed with COVID-19 in the past week
    • 9% of the total cases the U.S. reported in the full course of the pandemic
    Chart of tests, cases, current hospitalizations, and deaths nationwide.
    Nationwide COVID-19 metrics published in the COVID Tracking Project’s daily update on December 5. The seven-day average for reported COVID-19 deaths is at an all-time high.

    More Americans are getting sick with COVID-19 now than ever before in the pandemic. And this outbreak isn’t isolated. Eleven states broke case records on Thursday, for example, including states in all major regions of the country.

    Last week, I warned you about data fluctuations which I expected to see thanks to the Thanksgiving holiday. America first reported fewer cases, deaths, and tests, as public health workers took a day or two off and data pipelines were interrupted. Then, the cases which were not reported over the holiday were added to the count belatedly, culminating in a record of 225,000 new cases on Friday.

    If you visit the COVID Tracking Project’s website, you’ll still see a warning notice about these Thanksgiving data disruptions. However, one key number tells us that the pandemic is, in fact, still getting more dire: more patients are getting admitted to the hospital than ever before.

    Last week, America saw:

    • Over 100,000 people now hospitalized with COVID-19 (it’s 101,200 as of yesterday, twice the number of patients at the beginning of November)
    • 15,000 new COVID-19 deaths (5 for every 100,000 people)

    To understand the impact of that hospitalization record, read Alexis Madrigal and Rob Meyer in The Atlantic:

    Many states have reported that their hospitals are running out of room and restricting which patients can be admitted. In South Dakota, a network of 37 hospitals reported sending more than 150 people home with oxygen tanks to keep beds open for even sicker patients. A hospital in Amarillo, Texas, reported that COVID-19 patients are waiting in the emergency room for beds to become available. Some patients in Laredo, Texas, were sent to hospitals in San Antonio—until that city stopped accepting transfers. Elsewhere in Texas, patients were sent to Oklahoma, but hospitals there have also tightened their admission criteria.

    Or, for one doctor’s perspective, read this thread from Dr. Esther Choo:

    Deaths are also rising. The deaths of 15,000 Americans were reported last week—the highest number of any week in the pandemic thus far. In fact, COVID-19 was the leading cause of death in America last week, according to the Institute for Health Metrics and Evaluation.

  • Featured sources, Nov. 22

    These sources, along with all others featured in previous weeks, are included in the COVID-19 Data Dispatch resource list.

    • State COVID-19 vaccine plans: A new report from the Kaiser Family Foundation explores how state public health departments are planning to distribute COVID-19 vaccines once they become available. The report includes common themes and concerns across all 50 state plans, as well as links to the plans themselves. One insight that stuck out to me: “Just over half (25 of 47, or 53% ) of state plans report having immunization registries/database systems in place that are described as being (at least fairly) comprehensive and reliable; in the other state plans that information is unclear.”
    • COVID-19 Testing Communications Toolkit: The Brown School of Public Health has compiled a resource to help public health communicators encourage COVID-19 testing. The toolkit includes evidence-based tutorials, handouts, and an image library, all of which are free for public use.
    • COVID-19 and Impacted Communities: A Media Communications Guide: This is another communications tool from the New York COVID-19 Working Group. The guide includes best practices for explaining key terms, advice on framing stories, and how to avoid stereotypical narratives about minority communities.
    • SARS-CoV-2 and COVID-19 Data Hub: Erin Sanders, a nurse practitioner and contact tracer, has compiled a list of data sources on the novel coronavirus. The list includes clinical data, transmission data, and genomic data, among other medical and epidemiological topics.
  • National numbers, Nov. 22

    National numbers, Nov. 22

    In the past week (November 15 through 21), the U.S. reported about 1.2 million new cases, according to the COVID Tracking Project. This amounts to:

    • An average of 167,000 new cases each day (19% increase from the previous week)
    • 358 total new cases for every 100,000 Americans
    • 1 in 279 Americans getting diagnosed with COVID-19 in the past week
    • 10% of the total cases the U.S. reported in the full course of the pandemic
    Nationwide COVID-19 metrics published in the COVID Tracking Project’s daily update on November 21. The new cases seven-day average has doubled since the beginning of November.

    1 in every 114 Americans has been diagnosed with COVID-19 since the beginning of November, and cases aren’t slowing anywhere in the nation. The COVID Exit Strategy tracker categorizes the spread in every state except for Maine and Hawaii as “uncontrolled”; even Vermont, praised by public health experts for its mitigation efforts, is now seeing record numbers.

    America also saw:

    • 10,100 new COVID-19 deaths last week (3.1 per 100,000 people)
    • 83,200 people currently hospitalized with the disease, as of yesterday (20% increase from the previous week; 76% increase from the start of November)

    To see how your community is faring, check the COVID-19 Risk Levels Dashboard for state- and county-level insights.

  • Featured sources, Nov. 15

    These sources, along with all others featured in previous weeks, are included in the COVID-19 Data Dispatch resource list.

  • A new metric for conceptualizing cases

    A new metric for conceptualizing cases

    Last week, a new metric appeared in the COVID Tracking Project’s daily updates. Within days, this metric was also featured in my newsletterBenjy Renton’s Off the Silk RoadNew York Governor Andrew Cuomo’s Twitter accountNPR, and even the New York Times.

    Here’s how it works. You take the number of COVID-19 cases reported in the past week and divide the current U.S. population by that case number. There are variations; the metric may also be calculated for different time spans or smaller geographies, such as a specific U.S. state. But the standard calculation focuses on the nation, over the past week.

    For example: in the past week, one in 331 Americans has been diagnosed with COVID-19. If we extend that out to the past two weeks: one in 192 Americans has been diagnosed with COVID-19 since November 1.

    Here’s what it looks like by state (reflecting data from November 5 to 12):

    “1 in X” chart published in the COVID Tracking Project’s daily update on November 12.

    The biggest challenge that data journalists like me face right now is putting massive COVID-19 numbers into a context that readers may easily understand. I’ve used a variety of analogies, comparisons, and visualizations, but I like this number because it feels visceral. I’ve had lectures smaller than 331 people. I’ve been to protests ten times bigger. It’s a number of people that I can picture, a number of people that would fit in my neighborhood park.

    Among COVID Tracking Project volunteers, this metric is known as the Camberg Number—after Nicki Camberg, City Data Manager at the Project, who first shared it in Slack earlier in November. I asked her where she got the idea for this calculation and how she’s thinking about pandemic data during this terrifying surge.

    Here’s what she said:

    When thinking about COVID-19, the metrics we’ve been using have started to blur together and stop having the same impact after months of staring at them. What is the difference between 100,000 and 150,000 new cases? Well, obviously, 50,000 more cases, but I can’t conceptualize that, nor can most people. Numbers that high feel almost abstract and easy to ignore. I could feel myself starting to normalize these increasing case and hospitalization rates, and I had to figure out a way to stop that from happening. If I, someone who spends all day every day collecting, discussing, and working with COVID-19 data, was starting to get desensitized to the pandemic—what must it be like for the general public?

    I knew I had to find a way to make it more personally relatable, but also find a way to use the data I look at every day to better inform my own decisions. When I go to the grocery store, what is the probability that someone in the store with me tested positive? How many people in my grade currently have COVID? If my grandmother leaves her house, how many people does she have to interact with before it’s likely she was in the presence with someone who could infect her?

    The first time I calculated this number was November 5th. The US had just hit 116,000 new cases in a day, the second day in a row of record breaking cases and the start of a week of near-constant exponential increases. I calculated that roughly 1 in 3,000 Americans were diagnosed with COVID-19 that day, and I was shocked. 1 in 3,000 people? That number felt like a punch in the gut, and made me see the devastating effect of this pandemic more than any other statistic I’d heard for months. It gets even worse when this is applied to state or local levels (which one can do using the newly released CTP City Dataset), and it is genuinely devastating when done by race.

    From the feedback I’ve gotten, it seems like a lot of people are feeling the same way I am: jaded and exhausted after half a year of a never ending pandemic. Sometimes we need a shock to the system to realize that this is not normal, is not something that can be ignored. Until there is a vaccine, cases will only continue to spike with the holiday season unless we all choose to practice radical empathy and collectively do all we can to curb the spread of the virus.

  • National numbers, Nov. 15

    National numbers, Nov. 15

    In the past week (November 8 through 14), the U.S. reported about 990,000 cases, according to the COVID Tracking Project. This amounts to:

    • An average of 141,000 new cases each day (38% increase from the previous week)
    • 302 total new cases per 100,000 people
    • 1 in 331 Americans getting diagnosed with COVID-19
    • 3.4 times the total cases Canada has reported over the entire course of the pandemic
    Nationwide COVID-19 metrics published in the COVID Tracking Project’s daily update on November 14. Hospitalizations are up 24% from the previous Saturday.

    Cases continue to rise across the country; 38 states reported over 1,000 cases yesterday. The COVID Exit Strategy tracker now categorizes every state except for three as “uncontrolled spread,” and even Maine and Vermont are now “trending poorly.”

    America also saw:

    • 7,700 new COVID-19 deaths last week (2.4 per 100,000 people)
    • 69,000 people currently hospitalized with the disease, as of yesterday (24% increase from the previous week)

    So many people have been infected and become seriously ill in recent weeks that hospital systems are overwhelmed. Two new articles published this past Friday, by ProPublica’s Caroline Chen and The Atlantic’s Ed Yong, center the experiences of America’s stressed, scared, and exhausted healthcare workers. Both pieces give faces and voices to these immense numbers. If you read nothing else this weekend—even if you don’t read the rest of this newsletter—please read those two stories.

    I offered my own take on the current outbreak in a Twitter thread last Wednesday. This is the message I want to highlight:

    We already know what we need to do to get this nationwide outbreak under control. We did it in March. Stay home. Limit your activity and travel to the essentials. Shrink your circle of contacts. Take care of your neighbors. And, whenever you’re outside the house—wear a mask.

  • Featured source, Nov. 8

    This source, along with all others featured in previous weeks, is included in the COVID-19 Data Dispatch resource list.

    • Household Pulse Survey by the U.S. Census: I featured this source—a survey program run by the U.S. Census to determine how COVID-19 impacted the lives of American residents—back in August. The Census did an initial round of surveys from April through July. But the dataset was so widely used that the Census expanded it to a second round of surveys, from August through October. New data are now being released in two-week intervals.
  • Your Thanksgiving could be a superspreading event

    Your Thanksgiving could be a superspreading event

    Between 10% and 20% of people infected with COVID-19 are responsible for 80% of the virus’ spread.

    You might have seen this statistic before, but take a second to think about what it means. Imagine that one unlucky person at a crowded restaurant, infected with the novel coronavirus but not yet symptomatic enough that she has noticed, spreads the virus to ten others. Meanwhile, her ten coworkers, who all contracted the virus at the same time as she did, do not spread the virus to anyone else at all. This type of dispersal—what epidemiologists call a large value—introduces a level of randomness to COVID-19 spread which makes it difficult to track and protect against.

    But scientists are learning to better understand COVID-19 spread by keeping tabs on those instances where one person infects many, which they call superspreading events. While research continues about the underlying biology driving who is infectious and who isn’t, investigating the events in which people get infected can help us better understand how to protect ourselves and our communities.

    For more thorough explanations into the science of superspreading, I’d recommend you read Christie Aschwanden in Scientific AmericanZeynep Tufekci in The Atlantic, or Martin Enserink, Kai Kupferschmidt, and Nirja Desai with an incredible series of scrolly visualizations in Science Mag.

    Here, I’m focusing on the data around these events: how we identify them, what the data tell us so far, and why we should keep them in mind as temperatures drop and cases rise.

    How do we find superspreading events?

    The CDC defines a superspreading event as one in which “a few persons infect a larger number of secondary persons with whom they have contact.” This leaves a lot of room for interpretation, as different researchers have different thresholds for determining how many people must be involved. Depending on who you talk to, anything from a 500-person rally to your extended family’s Fourth of July gathering might fit the definition.

    So, when you see a sensationalist article claiming that some event caused superspreading, it is important to consider what definition was being used and how the given event was identified as one that fits.

    There are three ways superspreading events can be identified:

    • Continuous tracking of an outbreak site: This is the easiest way to find superspreading. You have a place with a lot of people—say, a nursing home, a prison, a college campus—and you watch how many cases erupt over time. This may be an easier means of finding events because local administrations or public authorities are conducting regular testing and making data public; meanwhile, the sites themselves may have large groups of people living and working in close quarters, which is a prime environment for virus spread. Scientists count these sites as superspreading events even though they are not “events” in the way we usually think of the word because this type of long-term superspreading can have the biggest impact. California’s San Quentin State Prison, for example, was ordered to reduce its prison population after over 2,000 prisoners tested positive.
    • Contact tracing: This strategy, in which public health officials contact individuals who test positive and ask them about their contacts to find other infected individuals, has not taken off in the U.S. as it has in other countries, which makes it harder for us to identify superspreading events. It works like this: if contact tracers find that one new case is a teacher at an elementary school, for example, they can call other teachers and school administrators to find out which other cases are connected to that location. Japan has famously avoided widespread lockdowns by employing a “cluster-busting” strategy in which officials contact-trace backwards from new cases in order to find how those people got infected, then tell other people at the spreading events to isolate. Scientists in Europe and the U.S. are now promoting this approach as our cases surge.
    • Scientific studies: This strategy of superspreading identification is perhaps the least consistent, but it gets the most press. Epidemiologists may use publicly available case data, cell phone tracking data, or other information to look for patterns in new cases after major events. Such studies may draw attention, as a working paper on the Sturgis, South Dakota motorcycle rally did in September, but it can be difficult for scientists to investigate events when they don’t have access to data on precisely which cases are connected and how. The Sturgis paper was criticized for making estimates based on unreliable data. A similar new paper on the COVID-19 impact of Trump rallies is currently undergoing peer review.

    Where do superspreading events happen?

    Full-screen dashboard link.

    Independent researcher Koen Swinkels started a database to answer this question. The database is compiled from media reports, scientific papers, and public health dashboards, as well as volunteer reports. (You can submit an event through a form on the database’s site.)

    As of November 7, the database includes about 1,600 superspreading events, ranging from churches to dinner parties to meat processing plants. About 1,100 of these events took place in the U.S. For those American events, the most common superspreading settings by far are prisons (50,000 cases), rehabilitation/medical centers (27,000 cases), nursing homes (26,700 cases), meat processing plants (13,900 cases), and other medical centers (12,200 cases). Parts of the Northeast, West Coast, and South are heavily represented in the database, while other areas of the country have yet to see significant superspreading events logged.

    You can explore the map pictured above, as well as a bar chart which organizes superspreading settings by their COVID-19 case numbers, in a pair of interactive Tableau visualizations which I built based on this database.

    Swinkels emphasized in an email to me that the database is not at all representative of all COVID-19 superspreading events which have taken place, in America or around the world. “Hundreds of millions of people have been infected with SARS-CoV-2, while we have only about 200,000 cases linked to the 1,600 superspreading events in our database,” he said.

    He and other members of the team, including professors at the London School of Hygiene and Tropical Medicine, are currently compiling events from the most easily available public sources, which he admits is not a comprehensive strategy. Swinkels also noted that the events identified by public sources may be biased by where public health officials direct their focus, which can lead to settings that were closed in the spring or are now operating under restrictions being left out of this database and of superspreading research more broadly. The database is also biased by the team’s English-language familiarity; they are looking to find more events described in non-English language publications.

    What does this mean for the holidays?

    This newsletter topic was inspired by a reader question I got last week: Ross asked me how post-election gatherings and holiday celebrations might contribute to COVID-19 spikes.

    The evidence so far suggests that protests have not yet been a major cause of COVID-19 spikes. But “so far” is doing a lot of work in that sentence. While protests are generally outside and see high mask compliance, Swinkels explained, they tend to involve talking and singing in close contact, and instances of transportation and socialization around a protest might pose more risk. (Imagine, for example, shouting “FUCK TRUMP!” in a crowd of 500 with two friends, going to an outdoor bar together afterward, then each taking the bus home to three different parts of the city. That’s a lot of risk for one evening.)

    More research on protests is necessary to truly determine how much risk they might pose to the communities around them. And, as contact tracing apparatuses in different parts of the country scale up—slowly but surely—such research will get easier.

    Holiday celebrations, on the other hand, are a definitive cause for concern. These celebrations almost always occur indoors, involve talking and eating, and bring people together from disparate locations. Superspreader events also almost always occur indoors, may involve loud talking, and expand COVID-19 risk from one area to another. There’s a reason that Dr. Anthony Fauci’s daughters are not traveling home for Thanksgiving.

    I asked Koen what he’d learned from compiling and comparing hundreds of superspreader events. “Knowing more about where and when superspreading events occur can help you to avoid high-risk situations and live more freely in low-risk situations,” he said. He listed several key risk factors: indoors, poor ventilation, many people, close together, prolonged periods, loud vocalization (such as singing or shouting), and cold, dry air.

    He also highlighted the importance of understanding aerosol transmission. The six feet rule we’ve all come to know and flaunt is based on the dispersal of larger air particles, which don’t travel far from an infected person. But aerosols, which are smaller particles, are able to travel further and stay in the air longer—especially in indoor, poorly ventilated spaces. You can sit all the way across the room from Grandma while you eat, but if masks are off and all the windows are closed, it won’t make much difference. This FAQ document by aerosol scientists provides much more detail about how this type of COVID-19 spread works.

    I’m not going to tell you to avoid traveling for the holidays; I’m not a public health expert, I don’t have that authority. But I can give you this fact: your Thanksgiving could be a superspreading event. So could the train you take to get to your relatives’ house. So could the bar where you go for outdoor drinks a few days before traveling. In order to make it through this winter, we must all be aware of our risks and adjust our behavior accordingly.