Author: Betsy Ladyzhets

  • National numbers, November 28

    National numbers, November 28

    Community transmission levels by state, as of November 24. Florida is the only state with “moderate” transmission, while several other Southern states have “substantial” transmission. Chart via the CDC.

    In the past week (November 18 through 24), the U.S. reported about 660,000 new cases, according to the CDC.* This amounts to:

    • An average of 94,000 new cases each day
    • 201 total new cases for every 100,000 Americans

    Last week, America also saw:

    • 41,000 new COVID-19 patients admitted to hospitals (12 for every 100,000 people)
    • 6,900 new COVID-19 deaths (2.1 for every 100,000 people)
    • 100% of new cases are Delta-caused (as of November 20)
    • An average of 1.8 million vaccinations per day (including booster shots; per Bloomberg)

    *Note: This week, the CDC did not provide COVID-19 data updates for most metrics on Thursday, Friday, or Saturday due to the holiday, so my update is based on Wednesday’s data.

    As is typically the case on holidays, Thanksgiving has made COVID-19 reporting a bit wonky. The CDC didn’t update its dashboard at all from Thursday through Saturday, and it is not updating vaccination data all weekend. At the same time, public health workers at many state and local agencies are taking a well-deserved long weekend off—leading to delayed reports of cases that will show up in the next couple of weeks. 

    Still, cases seem to continue trending up at the national level. The U.S. is now reporting close to 100,000 new cases a day, and holiday travel is likely to push this number up further. Michigan, Minnesota, and New Hampshire are the country’s three biggest hotspots, per the latest Community Profile Report (released Wednesday), all with over 500 total new cases per 100,000 people in the past week.

    Other Northern states—Wisconsin, Maine, Colorado, Vermont—are also reporting high case rates, while Southern states continue to see lower numbers. Florida actually has the lowest case rate in the country, at 49 new cases per 100,000 people in the past week. This state is likely benefitting from COVID-19’s seasonal nature, combined with a lot of built-up immunity from the region’s summer Delta surge.

    Nationally, the number of COVID-19 deaths in the U.S. in 2021 has surpassed the total deaths from the virus in 2020. Even though vaccines have been widely available for most of this year. The 2020 number is likely a significant undercount, as many people who contracted the coronavirus in spring 2020 were unable to get tested—but still, this milestone is disheartening.

    Vaccination numbers have increased dramatically in the U.S. in recent weeks with well over one million shots given a day, thanks to booster shot availability and new eligibility for children under age 12. About 38 million people have now received their third doses, according to the CDC. But whether this will be enough to blunt the coming winter surge remains to be seen.

  • COVID source callout: CDC’s breakthrough case data

    The CDC has not updated its breakthrough case data since September. A full two months ago.

    Earlier in 2021, the agency reported a total count of breakthrough infections, hospitalizations, and deaths—then switched to reporting only those breakthrough cases leading to hospitalization or death in May.

    The page that used to house this data now no longer includes total case counts; instead, the CDC redirects users to a couple of other pages:

    The CDC and FDA expanded booster shot eligibility to all adults in part because of increasing COVID-19 cases across the country.  But without comprehensive breakthrough case data, as I’ve said numerous times, it’s hard to pinpoint exactly how well the vaccines are working—and who’s most at risk of a breakthrough case.

    MedPage Today, which published a detailed article on this topic, received a statement from the CDC claiming that the breakthrough case and death data will be updated “in mid-November, to reflect data through October 2.” This long lag is due to the time it takes for the CDC to link case surveillance records to vaccination records, the agency said.

    Almost a year into the U.S.’s COVID-19 vaccination campaign, you’d really think our national public health system would have a better way of monitoring breakthrough cases by now.

  • Sources and updates, November 21

    • CDC adds data on 5-11 vaccinations: The main vaccinations page on the CDC’s COVID-19 dashboard now includes vaccination rates for all U.S. residents ages 5 and older, in addition to all the previous categories (12 and older, 18 and older, 65 and older). These rates are available by dose and by state. Plus, the CDC has added an age 5-11 category to its demographic vaccination trends page. Notably, age 5-11 data haven’t been added to the Community Profile Reports yet, but I expect this will happen in the next couple of weeks.
    • Breakthrough case reporting by state: 36 states are reporting breakthrough COVID-19 cases, 34 are reporting breakthrough hospitalizations, and 37 are reporting breakthrough deaths, according to a report from former COVID Tracking Project researchers and the Rockefeller Foundation. The report also discusses the challenges of tracking breakthrough cases and the importance of linking clinical and demographic data to these cases.
    • Long COVID resources from ApresJ20: ApresJ20, a Long COVID association based in France, has compiled this extensive document of over 1,000 scientific papers about the condition. Topics include defining Long COVID, characterizing symptoms, managing patient care, genetic associations, and more. For each paper, the document includes its title, authors, publish date, peer review status, and summary.

  • Reader question: How long will COVID-19 restrictions continue?

    Reader question: How long will COVID-19 restrictions continue?

    When will we exit the COVID-19 safety freeway and enter a “pandemic offramp?” Image edited from Michael Rivera / Wikimedia Commons.

    A couple of weeks ago, I received a reader question from a friend of mine who recently got engaged! He and his fiancée are planning a wedding in summer 2023, and he asked me: “How likely do you think it is that (1) the COVID-19 pandemic remains a serious danger to our safety in the summer of 2023 and (2) the government still has the energy to keep enforcing COVID-19 restrictions?” I’m going to tackle these questions one at a time.

    Will the COVID-19 pandemic still be a serious danger to our safety in summer 2023?

    I talked to an epidemiologist last week (for an upcoming story); he pointed out that COVID-19 is incredibly unpredictable—even for the most knowledgeable experts.

    We don’t know why Delta surges appear to dip after two months, for example, or why cases might pick back up again after a decline. We can hypothesize (at least in the U.S.) that cold weather and more indoor gatherings are playing a role in the current beginnings-of-a-surge, but that’s a hypothesis. And there are plenty of other questions we’re still working to answer about the coronavirus, from why some people are superspreaders to how the virus can cause symptoms that last over a year.

    So, it’s hard for me to say whether we’ll see more COVID-19 surges after the one that seems likely this winter, or what those surges will look like—whether we can stave off most severe infections with vaccinations (and booster shots), or whether hospitals will become overwhelmed yet again.

    At the same time, we know that the vaccines are very good at protecting people from COVID-19. Three-dose series (and two-dose series with Johnson & Johnson) are especially good at protecting people, including from infection, transmission, severe disease, and Long COVID.

    These incredible vaccines were developed based on early coronavirus strains, identified in China in early 2021. And they’re still working great against pretty much all variants. In the past couple of months, I’ve asked several experts what they think future variants might look like; and the consensus is that new mutations basically will arise from Delta at this point. The virus could get more contagious (as we saw with AY.4.2), but it seems unlikely that it would evolve to evade vaccine-induced immunity.

    Here’s Senjuti Saha, a sequencing expert from Bangladesh (whom I interviewed for my Popular Science story on global vaccine equity), discussing this issue:

    If we let infections hang around for too long without protecting people, without decreasing the burden of infection, it would not be surprising at all [if we see] newer variants. Will this be just a more concerning mutant of Delta? It’s possible. But it also could be something completely new that we’re not able to predict at the moment.

    But I think it’s also very, very hard for us to get a new variant that will evade all vaccines. With the number of vaccines we have, we can really vaccinate many, many new people very, very quickly. I think no matter what variant comes, we will be able to bring it under control.

    Of course, as far as I know, nobody saw a variant as contagious as Delta coming—so this could be overly optimistic. Again, there’s still a lot we don’t understand about this virus!

    Will the government still enforce COVID-19 restrictions in summer 2023?

    This second part of my friend’s question gets at a concept called “pandemic offramps,” which I’ve seen discussed a lot in COVID-19 scientist circles recently. The idea is, essentially, we need to decide how to get off the current freeway of COVID-19 safety and resume some kind of “normal life.”

    The New York Times recently devoted its morning newsletter to this concept, asking when Americans will stop needing to “organize their lives around COVID-19.” The newsletter argued that vaccinated people already accept risk that’s comparable to COVID-19 in other ways, such as driving in cars.

    But this piece drew criticism for suggesting that the U.S. loosen restrictions more when a new surge is approaching, more than 1,000 Americans are dying of COVID-19 every day, and billions around the world are still unvaccinated.

    We’re clearly not anywhere close to the “end of the pandemic” right now. But at some point, our leaders will need to answer some questions, such as: When are masks no longer necessary in public spaces? What about rigid vaccination checks, or regular testing for certain schools and businesses?

    In a recent article for The Atlantic, Sarah Zhang argues that the U.S. needs to agree on a new COVID-19 goal. We’re no longer striving for 70% of adults to get vaccinated by July 4, so what are we striving for? Is there a vaccination threshold that we can label “herd immunity,” or a daily case threshold that would signify the ability to loosen restrictions?

    Since public health systems in the U.S. are so fragmented, these questions likely won’t be answered all at once for everyone, but will be answered individually—by states, cities, school districts, businesses, and other institutions. New Mexico has already done this, to a certain extent, with a tiered system that helps counties add or remove COVID-19 safety measures based on outbreak levels.

    And of course, in some states, it seems like leaders have already decided that any level of COVID-19 cases is acceptable, as long as businesses stay open. We can see other (less conservative) leaders go in this direction, too, with the popularization of booster shots rather than, say, implementing new mask mandates.

    So, my TL;DR here is: I think serious restrictions on the level of wedding cancellation are pretty unlikely. Rather, the wedding venue might require vaccines, maybe including booster shots (possibly even multiple rounds of booster shots!). Maybe it will require COVID-19 tests or masks indoors, or the wedding planners might want to impose such precautions themselves for the safety of their guests.

    Personally, I hope that by summer 2023, we can at least buy rapid tests in bulk at Costco.

  • Boosters for all adults: Why eligibility expanded, and what it means for you

    Boosters for all adults: Why eligibility expanded, and what it means for you

    As of November 20, almost 35 million Americans have received a booster shot. That number is likely to shoot up in the coming weeks with expanded eligibility. Chart via the CDC.

    On Friday morning, the FDA authorized booster shots of Pfizer’s and Moderna’s COVID-19 vaccines for all adults in the U.S., six months after their first two doses. The CDC’s vaccine advisory committee voted to support this expanded booster eligibility that afternoon, and CDC leadership signed off on it a few hours later.

    Although the Biden administration has supported boosters for all adults since August, this specific federal eligibility expansion was preceded by several state and local leaders. Prior to Friday, the governors of Colorado, New Mexico, California, and other states said that any adult living in their jurisdictions could go get a booster, even if they didn’t fit the current national criteria. New York City leaders made a similar announcement this past Monday.

    Perhaps spurred on by these state decisions, the FDA and CDC moved quite quickly to authorize booster shots for a larger group of Americans. The FDA was originally just considering the move for Pfizer’s vaccine, then added Moderna to the mix just this week (when Moderna sent in a formal application).

    And the CDC’s vaccine advisory committee meeting had somewhat less time for deliberation than this committee typically tends to take. As Helen Branswell wrote in STAT News:

    The meeting was called on such short notice — it was announced Tuesday — that only 13 of the committee’s members were able to attend. When the meeting went longer than scheduled, two members had to leave without voting.

    I discussed expanded booster shot eligibility this week in a FiveThirtyEight Chat with editor Chadwick Matlin and science writer Maggie Koerth. Today at the COVID-19 Data Dispatch, I’d like to expand on the ideas in that chat piece, and attempt to answer a couple of other questions.


    Why expand booster eligibility to all adults?

    The short answer here is 1) more compelling evidence that boosters provide additional protection against coronavirus infection and 2) cases are rising in the U.S., and boosters might help make the surge less severe. Also, so far, very few cases of severe side effects have been reported following booster shots.

    Since the last FDA and CDC booster shot deliberations, more evidence has rolled in showing their efficacy. One notable study, from the Imperial College of London, was published this past Wednesday; the report suggests that people who’ve received two COVID-19 vaccine doses are more than twice as likely to test positive than those who’ve received three doses.

    While the study hasn’t yet been peer-reviewed, it’s part of a long-running surveillance project in the U.K. that examines COVID-19 prevalence in the entire population—including all age groups and comparing those who received Pfizer and AstraZeneca vaccines. “What they found is very, very strong data showing that as soon as 7 days after a third COVID-19 vaccine dose, the risk of infection is cut in half when you look at the entire population,” wrote Dr. Jorge Caballero in a Twitter thread summarizing the study. 

    At the same time, cases are going up in the U.S.—appearing to indicate a new winter surge. It’s no coincidence that Colorado and New Mexico, two of the states that were among the first to expand booster eligibility to all adults, are also among the states with the highest COVID-19 case rates.

    When Delta hit Israel this past summer, the country started administering booster shots: first to seniors at the end of July, then for younger and younger age groups until all adults were able to get the shots. Data from the country’s national health agency suggest that these booster shots played a key role in driving down case numbers among both vaccinated and unvaccinated Israelis.

    Personally, I am still a bit skeptical that Israel’s drop in cases was thanks to booster shots alone, as the data don’t necessarily show causation. But for a lot of U.S. leaders, the Israeli data provide a compelling model: it seems like booster shots can potentially drive down a case surge. This fits nicely into the national strategy that the Biden administration has already been preaching for months, which I call “vaccinate out of the pandemic.”

    Here’s how I explained it in the FiveThirtyEight chat piece:

    Listening to the advisory-committee meetings, I noticed that there seems to be this tension between the scientific experts who want to make robust evidence-based decisions — and the sense that, here in the U.S., our overall pandemic strategy is basically “vaccinate our way out of the pandemic.” If we had better masking, distancing, contact tracing, ventilation, rapid tests and everything else, we would not need boosters to stop people’s mild cases. But we’re not doing a great job at any of those other things, so … we kinda need boosters.

    Maggie Koerth also pointed out that booster shots are also politically easier for a lot of leaders than some of the other COVID-19 strategies I mentioned. We already have the shots stockpiled, so it’s just a matter of telling people to go get them—unlike, say, expanding contact tracing, which would take a huge investment in hiring and training people.

    In addition, the eligibility expansion solves communication and logistics challenges: now, every adult in the U.S. can just go get a booster shot, once enough time has passed from their first two doses. Almost 90% of vaccinated Americans were eligible already, but a lot of people were confused about whether they fit the criteria; the situation became much simpler after Friday.

    Should you get a booster shot?

    If you’re over 65 or you have a health condition that makes you particularly vulnerable to severe COVID-19 symptoms, answering this question is easy: YES. Go get a booster shot, as soon as you’re able to do so.

    If you live or work in a setting that puts you at risk of contracting the coronavirus—or if you live or work in a setting with other people who are more vulnerable than you—then you also have a pretty solid argument towards getting a booster shot.

    Even if you’re very unlikely to have a severe case of COVID-19 thanks to your initial vaccination, a mild case could still disrupt your work, your household, and others in your community. A teacher with breakthrough COVID-19 might cause their classroom to shut down for a week, for example, while a parent with breakthrough COVID-19 may interrupt their kids’ lives if those kids are too young to be vaccinated themselves.

    For those who don’t fall into these categories (like me!), the situation is a bit more complicated. But after following all of the news this week, I’ve decided that it does make sense for me to get my booster shot.

    Here’s why: much as I wish that national leadership and my own local leaders in NYC were investing in other measures to control COVID-19 cases, I don’t foresee widespread mask mandates, rapid tests, contact tracing, or any other safety overhauls anytime soon. Instead, my public health leaders are asking me (and those around me) to get booster shots in order to potentially lower case rates. So, I’ll do my part to contribute to that “vaccinate out of the pandemic” strategy, though I don’t necessarily agree with it.

    It’s also important to note here that vaccinating the people who are still unvaccinated is much more important for lowering overall case counts—and for keeping people out of the hospital—than boosters. That includes kids in the 5 to 11 age group. As Maggie Koerth said in our chat:

    If you’re under 65 and you’re not immune compromised, it almost certainly matters more to get your kiddos vaxxed the first time than to get yourself a booster. That’s my parent-centric takeaway from all this reading.

    And, of course, to end the pandemic on a global scale, we need to get first and second doses to everyone in the world. Right now, booster shots are hindering global vaccination: according to the WHO, there are about six times more boosters administered daily in wealthy nations right now than there are first and second doses administered in low-income nations.

    The U.S. has already chosen to stockpile millions of doses for boosters, so refusing a booster shot on an individual level doesn’t have any impact on the global situation. But there are other options for people who want to take action about vaccine inequality: for example, you can contact your congressional representatives about the issue.

    What happens after a lot of Americans get booster shots?

    Someone asked me this question on Twitter earlier this week. Do booster shots lead to other loosening COVID-19 restrictions, or something else?

    It’s difficult to answer that right now, because the U.S. is still close to the beginning of our booster shot rollout. Within a couple of months—and millions more doses—we’ll have some data on whether booster shots here lead to a drop in cases, like what we saw in Israel. At the same time, many European countries are similarly offering booster shots to wide swaths of their populations; we can also watch what happens in those nations.

    The U.S. is still likely to face a case surge this holiday season, I think, simply due to cold weather combined with travel and gatherings. But perhaps booster shots will mean that hospitalizations don’t rise as much as cases do, or that a higher share of the cases are mild. We’ll have to see.

    Looking beyond this winter, we could see three shots become standard for COVID-19 vaccines. (Several other vaccines, such as HPV, are three-shot series.) We could also see annual boosters for COVID-19, similar to flu shots. More study of the booster shots’ effectiveness and of long-term COVID-19 immunity in general will help scientists figure this out.

    Finally, I couldn’t end this post without pointing out the continued data gaps here. The U.S. is still not tracking breakthrough cases in any kind of comprehensive manner, and a lot of information is missing on who’s getting booster shots—the CDC and most states are not reporting demographic data on booster recipients.

    To quote Dr. Katelyn Jetelina from her recap of Friday’s CDC advisory committee meeting:

    And this is it. This [three small studies] is all the data the CDC presented today. Which is insane— the United States does not have a real-time, comprehensive picture of our vaccines, nor the number of breakthrough cases, nor who’s more likely to have a breakthrough case or not. I cannot emphasize enough of how detrimental this is to our public health response. Bad data produces (potentially) bad policy. We are flying blind.


    More vaccine reporting

  • National numbers, November 21

    National numbers, November 21

    New York City is now seeing about 14 new cases for every 100,000 people each day. Chart via THE CITY’s COVID-19 dashboard.

    In the past week (November 13 through 19), the U.S. reported about 620,000 new cases, according to the CDC. This amounts to:

    • An average of 88,000 new cases each day
    • 189 total new cases for every 100,000 Americans
    • 16% more new cases than last week (November 6-12)

    Last week, America also saw:

    • 38,000 new COVID-19 patients admitted to hospitals (12 for every 100,000 people)
    • 7,200 new COVID-19 deaths (2.2 for every 100,000 people)
    • 100% of new cases are Delta-caused (as of November 13)
    • An average of 1.3 million vaccinations per day (including booster shots; per Bloomberg)

    Last week, I wrote that the U.S. was at the start of a winter surge; this week, the surge is beginning to take off. Nationwide, cases are up 16% from last week to this week, and up 24% from two weeks ago. It’s not as sharp of an increase as what we saw during the first Delta surge in the summer, but it’s still concerning. New hospitalizations are also rising, up about 5% from last week.

    Michigan and Minnesota are now the country’s top hotspots, with 589 and 524 new cases for every 100,000 people in the past week, respectively, per the latest Community Profile Report. Other hotspots include more northern states: New Hampshire, North Dakota, Wisconsin, Vermont. After being a success story for most of the pandemic, Vermont is now seeing its highest case numbers yet.

    Meanwhile, in Europe, the ongoing surge has prompted increasingly strict COVID-19 safety measures. The government of Austria, which is also seeing record-high case numbers, announced on Friday that COVID-19 vaccination is now mandatory for the entire adult population. This follows a lockdown for unvaccinated Austrians only.

    Nearly 80% of Austrian adults are vaccinated, according to the New York Times; the U.S. is in a similar position. But here, all the attention is on booster shots—more than 33 million Americans have now received boosters—and on shots for kids in the recently eligible 5 to 11 age group. About 10% of kids in that age group have now received their first doses, which may seem less impressive when one considers that the U.S. had enough doses for the entire eligible population ready to go when the FDA and CDC approved the shots.

    In NYC, where I live, the case rate is now up at about 14 new cases for every 100,000 people, every day. That adds up to almost 100 new cases for every 100,000 people in the last week, meeting the CDC’s threshold for high transmission. About three in every four residents are vaccinated.

    To combat this increase, city leaders announced on Monday that all adults were eligible for a booster shot—a few days before the FDA and CDC made the same decision for all adults in the U.S. (More on that eligibility later in this issue.) But no efforts have been made to cut down on indoor dining, curb the crowds in Times Square, or actually enforce mask-wearing on the subway. In this new surge, it truly feels like everyone is out here fending for themselves.

  • (COVID) source shout-out: Data Is Plural

    This week, I want to give a shout-out to Data Is Plural: a newsletter by Jeremy Singer-Vine, the data editor at BuzzFeed News. Every Wednesday, Singer-Vine sends out links to and notes on a few interesting datasets, ranging from toxic pollution to movie script analysis.

    While this is not a COVID-specific source, the newsletter has frequently featured COVID-related datasets in the past two years—and I have occasionally pulled from it for my own featured sources section. I definitely recommend signing up for it, if you aren’t on the list already.

    Also, I got to hear Singer-Vine talk about his data editing philosophy at a training session yesterday, which was pretty cool. It was the first and only time I’ve ever heard someone read a Borges short story during a journalism webinar.

  • Sources and updates, November 14

    • Directory of Local Health Departments: The National Association of County and City Health Officials maintains this database of all local public health departments in the U.S. You can navigate to health department lists for specific states by clicking on the map, or explore a 180-page PDF that includes the name, website link, and contact information (in some cases) for every single department. 
    • Media and Misinformation update from the KFF Vaccine Monitor: The Kaiser Family Foundation typically updates its COVID-19 Vaccine Monitor project with reports once a month. This week, however, the Vaccine Monitor team released an additional report focusing on American adults’ experiences with misinformation. One key finding: about 78% of those surveyed “believe or are unsure about at least one common falsehood” about COVID-19 or the vaccines.
    • More data on vaccination for kids 5-11 is coming: About 900,000 children in the recently-eligible 5 to 11 age group were vaccinated in the first week since the CDC authorized shots for these kids, the White House announced on Wednesday. At the time, this estimate was higher than official numbers on the CDC’s dashboard due to data lags; but the agency is planning to publish more data on this age group by the end next week, according to Bloomberg editor Drew Armstrong.

  • Thinking about COVID-19 risk as winter approaches

    Thinking about COVID-19 risk as winter approaches

    I recently received a question from a COVID-19 Data Dispatch reader that followed a similar theme to many questions that readers, friends, and family members have asked me in the past few months. The question essentially outlined an event in the reader’s personal life that they’d been invited to attend, and asked for my advice: should they go? How risky was this event?

    I have a hard time answering these types of questions directly, because I am no medical expert—I’m far from qualified to give direct advice. Instead, I like to outline my own attitudes towards risk at the pandemic’s current moment, and try to explain what I might do in that situation.

    Right now, this type of decision-making feels harder than ever before. The majority of Americans are fully vaccinated, and we know how well the vaccines work. A growing number of Americans are getting booster shots, which we know are highly protective for seniors (and at least seem to reduce infection risk for others). So many of us are tired of the pandemic, and want to have a normal holiday season this year.

    But at the same time, I feel an impetus to stay cautious—to protect the people around me as much as I can—as COVID-19 cases start to rise again in New York City, where I live, and in many other places around the country. 

    It’s also important to note here that everyone has a different risk comfort zone right now, partially as a product of a dearth of local and federal safety regulations at this point in the pandemic. If you’re fully vaccinated, and you’re comfortable hanging out inside with a large group of fully vaccinated people, there is evidence to suggest that is a largely safe situation for you. But if you’re not comfortable at such an event, there is also evidence to suggest that you may be able to pick up the coronavirus (even from a fully vaccinated crowd) and bring it back to someone who is more vulnerable than you are. Every choice comes with a calculation—what risk are you willing to bring to yourself and to those around you? 

    With all of that in mind, there are a few things I consider when I try to decide how “risky” an event might be. First of all, I still consider outdoor events to be very safe; the benefits of open air, wind, and sun far outweigh Delta’s high capacity for transmission. Then, for indoor events, I think about a few different layers of safety measures:

    • Will everyone be fully vaccinated?
    • Will negative COVID-19 tests be required before the event?
    • Will masks be required?
    • Will windows be open, or will ventilation in the space otherwise be high-quality?
    • What are the COVID-19 case numbers in the surrounding county; are they above or below the CDC’s “substantial transmission” threshold (50 total new cases for every 100,000 people in the past week)?

    When at least three of these five conditions are met, I personally would consider an event safe for attendance. When fewer than three conditions are met, I tend to add additional layers of protection for myself and others in my immediate community by wearing a high-quality mask and getting tested before and after. (I might use an at-home rapid test or a PCR test, depending on how much security I want in that test result.

    STAT News surveyed 28 infectious disease experts on activities they would currently feel comfortable doing. Chart via STAT.

    Finally, if you’d rather listen to the insights of some high-profile COVID-19 experts than to me, I’ve got a source for you: STAT News recently surveyed 28 infectious disease experts on which activities they would feel comfortable doing right now. The responses to STAT’s survey reveal a diversity of risk comfort levels, even among people who are incredibly well-informed about the pandemic.

    The vast majority of experts said they would travel by air, train, or bus for Thanksgiving (mostly with a mask on), and the majority said they would not attend an indoor concert or event without mandatory masks. Other than that, all the questions are fairly split. The article (which I recommend reading in full!) includes a number of insights from those experts explaining their survey responses.

  • Public health data in the US is “incredibly fragmented”: Zoe McLaren on booster shots and more

    Public health data in the US is “incredibly fragmented”: Zoe McLaren on booster shots and more

    This week, I had a new story published at the data journalism site FiveThirtyEight. The story explores the U.S.’s failure to comprehensively track breakthrough cases, and how that failure has led officials to look towards data from other countries with better tracking systems (eg. Israel and the U.K.) as they make decisions about booster shots.

    In the piece, I argue that a lack of data on which Americans are most at risk of breakthrough cases—and therefore most in need of booster shots—has contributed to the confusion surrounding these additional doses. Frequent COVID-19 Data Dispatch readers might recognize that argument from this CDD post, published at the end of September.

    Of course, an article for FiveThirtyEight is able to go further than a blog post. For this article, I expanded upon my own understanding of the U.S.’s public health data disadvantages by talking to experts from different parts of the COVID-19 data ecosystem.

    At the CDD today, I’d like to share one of those interviews. I spoke to Zoe McLaren, a health economist at the University of Maryland Baltimore County, about how the U.S. public health data system compares to other countries, as well as how data (or the lack of data) contribute to health policies. If you have been confused about your booster shot eligibility, I highly recommend giving the whole interview a read. The interview has been lightly edited and condensed for clarity.


    Betsy Ladyzhets: I’m writing about this question of vaccine effectiveness data and breakthrough case data in the U.S., and how our data systems and sort-of by extension public health systems compare to other countries. So, I wanted to start by asking you, what is your view of the state of this data topic in the U.S.? Do you think we can answer key questions? Or what information might we be missing?

    Zoe McLaren: It’s the age-old problem of data sources. A lot of cases are not going to be reported at all. And then even the ones that are reported may not be connected to demographic data, for example, or even whether the people are vaccinated or not. Whereas other countries like Israel, and the U.K., your positive COVID test goes into your electronic health record that also has all the other information. 

    And Medicare patients, they have that whole [records] system. There will be information [in the system] about whether they got vaccinated, as well as whether they have a positive test. So that data will be in there. But for other people, it may or may not be in an electronic health record. And then of course, there’s multiple different electronic health record systems that can’t be integrated easily. So you don’t get the full picture.

    But it’s all about sample selection. Not everyone [who actually has COVID] is ending up in the data, which messes up both your numerator and denominator when you’re looking at rates.

    BL: Could you say more about how our system in the U.S. is different from places like Israel and the U.K., where they have that kind of national health record system?

    ZM: When the government is providing health insurance, then all of your records and the [medical] payments that happen, there’s a record of them… And then, because it’s a national system, it’s already harmonized, and everyone’s in the same system. So it’s really easy to pull a dataset out of that and analyze it.

    Whereas in the US, everything is incredibly fragmented. The data, and the systems and everything is very fragmented. The electronic health systems don’t merge together easily at all. And so you get a very fragmented view of what’s going on in the country.

    BL: Right, that makes sense. Yesterday, I was talking to a researcher at the New York State Health Department who did a study where they matched up the New York State vaccination records with testing records and hospitalization records, and were able to do an analysis of vaccine effectiveness. And he said, basically, the more specific, you tried to go with an analysis, the harder it is to match up the records correctly, and that kind of thing.

    ZM: Exactly. It’s easy to match on things like age, sex, race, since everybody has them. But then, the different data fields are gonna have different formats and be much harder to merge together.

    BL: So what can we do to improve this? I know Medicare for All is one option— 

    ZM: Medicare for All, end of story, end of article. It would solve so many problems.

    It’s tricky, though, because there isn’t a simple fix. All of these health systems have their own electronic health records, and integrating them is really costly and hard to do, and who is going to pay for that? There’s also additional privacy concerns about integrating things, in terms of protecting privacy and confidentiality. So, that’s really tricky.

    The way that we get around that, in general, is to have reporting requirements. Like with COVID tests, [providers are] required to report to the CDC or the HHS… Still, that’s also costly and time consuming. But that is kind-of the best thing that we can do right now, is have the different [public health] entities produce reports on a regular basis and send that to a centralized location. And the reports are supposed to be produced in a way that they are harmonized, they’re easy to put together from all the different systems.

    The problem with the different systems not integrating is, it requires everyone to basically fill out the equivalent of a form and send it in—listing individual patient information, or at the state level, individual county information. An example of that is the COVID data. All of the COVID data gets reported up to the national level [by state and county health departments]… 

    But the reporting often gives you the numerators, when you need to figure out the denominators. Because you would want to know, for example, we want to know what proportion of breakthrough cases end up hospitalized. But if only the hospitalized people end up in the data, and a lot of breakthrough cases go either undetected or never tested, or they do an at-home test and there’s no record of that positive case in the system, then your denominator is—there’s a problem with your denominator. That’s a problem with sample selection, you get people that are self-selecting into the numerator [by testing positive], but also self-selecting into the denominator [by getting a test to begin with].

    BL: Yeah, that makes sense. I know you said it would be pretty complicated to basically force different public health departments—to standardize them so that they’re all reporting in the same way. Is there more that researchers in the US could be doing in the short-term to either improve data collection or use what we have to answer questions like, what occupations might confer higher risk of a breakthrough case? 

    ZM: This is a coordination problem. Because in general, we all have an incentive to contribute to having a better understanding of breakthrough cases. But the trick is that, unless the national government or the CDC takes the role of saying what the [data] format’s gonna look like…

    Part of the problem is that there’s an effort involved [in collecting these data] and people don’t want to put in the effort. But if they do want to put in the effort, then you still have a coordination problem, because who gonna to be deciding what format we’re using?

    BL: Or like, what the data definitions are.

    ZM: Exactly. Like, do you report the month and the day of the vaccination dose, or just the month of the dose? Things like that where it doesn’t seem like a big deal, but it does matter for research purposes. If you look, for example, at the Census, or any of the national surveys, like the Current Population Survey or the National Labor Force Survey where we get unemployment numbers, there are big committees that figure out which questions we’re asking and how we ask them. So, if the CDC just says, like, “This is the dataset we’re building,” then everyone [local agencies] will be like, “Okay, we’re gonna send our reports in that way.” 

    Part of [the challenge] is that it takes effort to produce the data, and part of it is somebody needs to coordinate. And usually that would be something the CDC would do, saying, “This is the data that needs to be reported to us,” and everybody reports to them. But they could be doing more, they could be asking for more detailed information—for example, data based on vaccination status, because that information will be important for understanding the progression of the pandemic.

    BL: Yeah. I volunteered for the COVID Tracking Project for a while, and one of the most tedious things that we had to do there was figuring out different definitions for like, what states were considering a case or a test, or whatever else. So that definitely makes sense to me.

    ZM: Exactly. And the COVID Tracking Project filled a gap. Nobody was doing that [collecting data from the states], so the COVID Tracking Project did that… But it’s tricky, because a lot of the stuff that seems like splitting hairs [on definitions] really does make a difference when you’re doing your analysis.

    BL: I also wanted to ask you about what the implications are of this lack of standardized data in the U.S., and the lack of information that we have—largely around vaccinations, but I think there are other areas as well where we’re missing information. So I’m trying to figure out, for this story, how data gaps might contribute to the confusion that people feel when they watch health agencies make decisions. Like watching all the back and forth on booster shots, or thinking about Long COVID, other things like that.

    ZM: Well, we talk about evidence-based medicine, and we also care about evidence-based policy. And so it means that when the quality of data is poor, the quality of our policy is going to be worse. So it really is in everybody’s best interest to have high-quality data, because that is the bedrock of producing high quality policy.

    BL: Right. So if we don’t know, for example, if people who live and work in certain situations are more likely to have a breakthrough case, then we can’t necessarily tell them—we can’t necessarily say, “These specific occupations should go get booster shots.” And then we just say, “Everyone can go get a booster shot.”

    ZM: It means that we’re flying blind. And the problem of flying blind is twofold. One is that you can end up making poor decisions, the wrong decisions, because you don’t have the data. And then the other problem is that you end up making decisions that, in economics, we call it “inefficient.” I think about [these decisions] as, you end up with “one size fits all.” 

    If we have really high quality data, then we’re able to create different policies for different types of people, and that helps minimize any of the downsides. But the less data we have, the more we have to rely on “one size fits all.” And of course, if “one size fits all,” it’s going to be too much for some people and too little for others. Data would help improve that.

    BL: How do you think that this kind of “one size fits all” contributes to how individual people might be confused or might not be sure how to kind of interpret the policies for their own situations?

    ZM: I think in a “one size fits all,” people get very frustrated because they see in their own lives, both the uncertainty and how that can be stressful—and also the waste. The situations where they fall under one policy, but they have enough information to know that that policy doesn’t necessarily apply to them. It does undermine confidence in policymaking. People get frustrated with “one size fits all,” because it seems wasteful.

    Though sometimes the “one size fits all” is still optimal, it’s better than the alternative. For example, the recommendation of “one size fits all” wearing masks tends to trump the “one size fits all” of not wearing masks. But there’s waste. There are situations where we end up wearing masks where they wouldn’t necessarily be needed. And vice versa.

    BL: Yeah. That makes me think of friends I have who are eligible to get booster shots because of medical conditions, but they’re sort-of thinking, “I wish the shots could go to another country where they need vaccinations more.” And that’s not something individuals have any control over, but it’s frustrating.

    ZM: Part of it is, with the booster shots, is the guidelines that say people who have higher occupational exposure to risk [are eligible] without specifying exactly who that is. That is one way that we allow some leeway. So it’s not a “one size fits all” where nobody gets it, because there’s actually people who qualify under higher occupational exposure. But we also don’t want to have a “one size fits all” where we tell everyone they need it, because we do want to be sending doses abroad as well.

    So that’s a situation where we know that a “one size fits all” is not perfect. And so we create a, like, “use your judgement, talk to your doctor” kind-of thing that tries to help people self-select into the right groups… There are likely a lot of people who do have higher exposure and should be getting it, but don’t think the benefit applies to them.

    Editor’s note: According to one analysis, about 89% of U.S. adults will qualify for a booster shot after enough time has passed from their primary vaccine series. And, according to the October COVID-19 Vaccine Monitor report, four in ten vaccinated adults were unsure whether they qualified.

    BL: I also wanted to ask, you mentioned rapid tests—those don’t necessarily get reported. Are there other other things that you think pose data gaps in the U.S. public health system?

    ZM: With rapid tests, the actual tests are not getting reported. But the important thing is, people are getting tested. I mean, the reason we want good data quality is to reduce cases, and we wouldn’t want to limit access to rapid tests in order to collect data, because it’s much easier to prevent the cases by allowing people to get tested in their homes.

    But yeah, just the fact that there’s no centralized database for analysis [is a gap]. I mean, if you look at the U.K., and Israel, they have these great studies, because they’re able to just download, like, the entire population into a dataset. And it has all the information they need, like demographic factors. The fact that the U.S. has made so much of its national policy based on Israeli data, this shows how far behind we are with having our own data to answer these questions.

    BL: Yeah. I know, it’s something like half or a third of cases in the U.S., the CDC doesn’t have race and ethnicity information for [editor’s note: it’s 35%], and other stuff like that. It’s wild.

    ZM: Yeah… And one of the things about reporting is that every additional piece of data you want is very costly. And so you have to be very judicious about [collecting new values].

    BL: Well, those were all my questions. Is there anything I didn’t ask you that you think would be important for me to know for this story?

    ZM: Just that data is helpful for planning now, and helpful for the future. If we can improve our data systems now—it’s part of being prepared for the next pandemic.

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