The Delta variant (also known as B.1.617.2) was first identified in India earlier this spring. It’s now known to spread more easily than any other variant found so far and evade immunity from a prior COVID-19 infection. It’s now spreading rapidly in the U.S.
Read MoreWe finally have a straightforward variant naming system: on May 31, the WHO announced a system using letters of the Greek alphabet. B.1.1.7 (first identified in the U.K. is now Alpha, B.1.351 (first identified in South Africa) is now Beta, and so on.
Read MoreFeatured sources for the week of May 30 include healthcare workers, a new tool for tracking health equity, variant lineages, and more.
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Earlier this month, the CDC made a pretty significant change in how it tracks breakthrough cases. Instead of reporting all cases, the agency is only investigating and collecting data on those cases that result in hospitalizations or deaths. Here’s what this decision means, and why I’m calling it a lazy move.
Read MoreTwo more important CDC data updates for this week: the CDC added more options for its vaccine demographic data and more recent variant data.
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It takes three to four weeks for data on a variant COVID-19 case to be made public. I have been quietly stressing out about this fact for about a month, since I learned it from Will Lee, VP of science at the genomics company Helix. This lag time includes the actual sequencing process as well as coordination with public health authorities and sequencing data repositories.
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A lot of journalists, especially those who aren’t familiar with the science/health beat, may be inclined to publish news of breakthrough cases as surprising or monumental. In fact, these cases—referring to a COVID-19 infection that occurs after someone has been fully vaccinated—are entirely normal, yet incredibly rare. But we still need to pursue data on them.
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The CDC has stepped up its sequencing efforts in a big way over the past few months, going from 3,000 a week in early January to 10,000 a week by the end of March. But data on the results of these efforts are scarce and uneven, with some states doing far more sequencing than others. And the CDC itself publishes data with gaping holes and lags that make the numbers difficult to interpret.
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This week, the CDC published a new data page about the coronavirus variants now circulating in the U.S. The page provides estimates of how many new cases in the country may be attributed to different SARS-CoV-2 lineages, including both more familiar, wild-type variants (B.1. and B.1.2) and newer variants of concern. These new data are useful, but the page has some presentation problems
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Our current phase of the pandemic may be described as a race between vaccinations and the spread of variants. Right now, it’s not clear who’s winning. Despite our current vaccination pace, the U.S. reported only 10,000 fewer new cases this week than in the week prior—and rates in some states are rising.
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